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Commit 73b16ee

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Add initial Bombast configuration
See https://github.com/scijava/bombast
1 parent b254053 commit 73b16ee

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‎bombast.toml‎

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[filter]
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includes = [
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"ca.mcgill:*",
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"io.scif:*",
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"jitk:*",
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"mpicbg:*",
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"net.imagej:*",
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"net.imglib2:*",
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"net.preibisch:*",
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"org.bonej:*",
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"org.janelia.saalfeldlab:*",
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"org.janelia:*",
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"org.morphonets:*",
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"org.scijava:*",
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"sc.fiji:*",
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]
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excludes = [
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# TEMP: Exclude org.bytedeco:hdf5 until cisd:jhdf5 is gone.
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'org.bytedeco:hdf5',
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# TEMP: Skip components within multi-module reactors.
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# Neither melting-pot.sh nor release-version.sh understand
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# multi-module repositories; release-version.sh needs to learn
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# how to tag and release individual components from multi-module
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# repos, so that when melting-pot.sh shallow clones the repo at
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# that tag and invokes a build, it will be building only the
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# released component as it does with single-component repos.
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'org.scijava:scijava-collections',
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'org.scijava:scijava-common3',
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'org.scijava:scijava-concurrent',
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'org.scijava:scijava-discovery-test',
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'org.scijava:scijava-discovery',
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'org.scijava:scijava-function',
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'org.scijava:scijava-legacy',
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'org.scijava:scijava-meta',
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'org.scijava:scijava-ops-api',
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'org.scijava:scijava-ops-benchmarks',
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'org.scijava:scijava-ops-engine',
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'org.scijava:scijava-ops-ext-parser',
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'org.scijava:scijava-ops-flim',
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'org.scijava:scijava-ops-image',
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'org.scijava:scijava-ops-indexer',
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'org.scijava:scijava-ops-opencv',
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'org.scijava:scijava-ops-spi',
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'org.scijava:scijava-ops-tutorial',
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'org.scijava:scijava-priority',
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'org.scijava:scijava-progress',
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'org.scijava:scijava-struct',
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'org.scijava:scijava-taglets',
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'org.scijava:scijava-testutil',
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'org.scijava:scijava-types',
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'mpicbg:mpicbg', 'mpicbg:mpicbg_',
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# NB: Skip artifacts requiring minimum Java version >8.
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'*:algart-tiff',
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'*:javafx-base',
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'*:javafx-controls',
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'*:javafx-fxml',
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'*:javafx-graphics',
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'*:javafx-media',
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'*:javafx-swing',
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'*:javafx-web',
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'*:SNT',
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# NB: Skip closed-source artifacts.
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'*:bonej-plus',
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# NB: The following artifacts have messy dependency trees.
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# Too many problems to test as part of the mega-melt.
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# See WARNING block in pom-scijava's pom.xml for details.
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'net.imagej:imagej-server',
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'*:spark-core_2.11',
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# NB: Skip scijava forks of third-party projects.
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# These are very stable, with few/no dependencies, and
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# don't need to be retested as pom-scijava evolves.
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'org.scijava:j3dcore',
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'org.scijava:j3dutils',
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'org.scijava:jep',
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'org.scijava:junit-benchmarks',
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'org.scijava:vecmath',
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# NB: Skip alternate flavors of other managed components.
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'*:gluegen', # uberjar flavor of gluegen-rt
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'*:jogl-all-noawt', # slimmed down flavor of jogl-all
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# NB: All the SWT platform JARs have the same classes.
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# The current platform will be brought in transitively.
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'*:org.eclipse.swt.cocoa.macosx',
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'*:org.eclipse.swt.cocoa.macosx.x86_64',
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'*:org.eclipse.swt.gtk.aix.ppc',
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'*:org.eclipse.swt.gtk.aix.ppc64',
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'*:org.eclipse.swt.gtk.hpux.ia64',
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'*:org.eclipse.swt.gtk.linux.ppc',
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'*:org.eclipse.swt.gtk.linux.ppc64',
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'*:org.eclipse.swt.gtk.linux.s390',
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'*:org.eclipse.swt.gtk.linux.s390x',
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'*:org.eclipse.swt.gtk.linux.x86',
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'*:org.eclipse.swt.gtk.linux.x86_64',
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'*:org.eclipse.swt.gtk.solaris.sparc',
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'*:org.eclipse.swt.gtk.solaris.x86',
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'*:org.eclipse.swt.win32.win32.x86',
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'*:org.eclipse.swt.win32.win32.x86_64',
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# NB: All SLF4J bindings have the same classes.
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# We'll rely on logback-classic being present here.
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'org.slf4j:slf4j-jcl',
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'org.slf4j:slf4j-jdk14',
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'org.slf4j:slf4j-nop',
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'org.slf4j:slf4j-simple',
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# NB: Cannot include both commons-logging and jcl-over-slf4j;
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# see: http://www.slf4j.org/codes.html#jclDelegationLoop
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'org.slf4j:jcl-over-slf4j',
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]
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[build]
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min-java-version = 8
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[skip-tests]
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components = [
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# java.lang.AssertionError
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# at org.scijava.minimaven.BasicTest.testClassifiers(BasicTest.java:216)
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"org.scijava:minimaven",
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# Error while checking the CLIJ2 installation: null
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"sc.fiji:labkit-pixel-classification",
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]
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[remove-tests]
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# CachedOpEnvironmentTest fails intermittently. Of course, it should be
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# somehow fixed in imagej-ops. But for now, let's not let it ruin the melt.
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"net.imagej:imagej-ops" = ["net.imagej.ops.cached.CachedOpEnvironmentTest"]
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# In org.janelia.saalfeldlab.n5.metadata.ome.ngff.v04.WriteAxesTests.testXYT:
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# java.util.NoSuchElementException: No value present
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"org.janelia.saalfeldlab:n5-ij" = ["org.janelia.saalfeldlab.n5.metadata.ome.ngff.v04.WriteAxesTests"]
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# Avoid notNull assertion error at
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# org.janelia.saalfeldlab.n5.universe.metadata.MetadataTests.testEmptyBase(MetadataTests.java:346)
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"org.janelia.saalfeldlab:n5-universe" = ["org.janelia.saalfeldlab.n5.universe.metadata.MetadataTests"]
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# In org.janelia.saalfeldlab.n5.zarr.ZarrCachedFSTest.cacheBehaviorTest:
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# arrays first differed at element [0]; expected:<[a]> but was:<[c]>
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"org.janelia.saalfeldlab:n5-zarr" = ["org.janelia.saalfeldlab.n5.zarr.ZarrCachedFSTest"]
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# Note: The above test is fixed with saalfeldlab/n5-zarr@e7edcec3,
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# but the fix is only available in n5-zarr 2.0.0-alpha-1, and we
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# do not want to update the SciJava BOM to the alpha version.
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# In sc.fiji.labkit.ui.plugin.CalculateProbabilityMapWithLabkitIJ1PluginTest.test:
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# Macro Error: "probability map for blobs.tif" not found in line 4
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# selectImage ( <"probability map for blobs.tif"> ) ;
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# java.lang.RuntimeException: Macro canceled
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# at ij.macro.Interpreter.error(Interpreter.java:1403)
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# at ij.macro.Functions.selectImage(Functions.java:3225)
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# at ij.macro.Functions.doFunction(Functions.java:136)
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# at ij.macro.Interpreter.doStatement(Interpreter.java:280)
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# at ij.macro.Interpreter.doStatements(Interpreter.java:266)
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# at ij.macro.Interpreter.run(Interpreter.java:162)
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# at ij.macro.Interpreter.run(Interpreter.java:92)
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# at sc.fiji.labkit.ui.plugin.CalculateProbabilityMapWithLabkitIJ1PluginTest.test(CalculateProbabilityMapWithLabkitIJ1PluginTest.java:65)
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"sc.fiji:labkit-ui" = ["sc.fiji.labkit.ui.plugin.CalculateProbabilityMapWithLabkitIJ1PluginTest"]
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[components."net.imagej:ij"]
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"java-version" = 11
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[components."net.imglib2:imglib2-mesh"]
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"java-version" = 11

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