← 返回首页
nf-core · GitHub
Skip to content

Navigation Menu

Toggle navigation
Sign in
Appearance settings
nf-core
Search or jump to...

Search code, repositories, users, issues, pull requests...

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted
Cancel Submit feedback

Saved searches

Use saved searches to filter your results more quickly

Cancel Create saved search
Appearance settings
Resetting focus

nf-core

A community effort to collect a curated set of analysis pipelines built using Nextflow.
README.md

Welcome to @nf-core!

@nf-core is a community effort to collect a curated set of analysis pipelines built using Nextflow (@nextflow-io).

Here's how to get started:

Pinned Loading

  1. tools tools Public

    Python package with helper tools for the nf-core community.

    Python 315 250

  2. modules modules Public

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    Nextflow 419 1.1k

  3. rnaseq rnaseq Public

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

    Nextflow 1.3k 881

  4. sarek sarek Public

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    Nextflow 578 539

  5. configs configs Public

    Config files used to define parameters specific to compute environments at different Institutions

    Nextflow 110 365

  6. proposals proposals Public

    Where new ideas for nf-core pipelines, special interest groups and more are proposed

    10 6

Repositories

Loading
Type
Select type
All Public Sources Forks Archived Mirrors Templates
Language
Select language
All Groovy HTML Java JavaScript Makefile MDX Nextflow Python R Ruby Shell TypeScript
Sort
Select order
Last updated Name Stars
Showing 10 of 196 repositories
View all repositories

Top languages

Loading…

Most used topics

Loading…

Footer

© 2026 GitHub, Inc.